Added some files, updated some files

preprocessing_and_cleaning.py

@@ -3,7 +3,7 @@ import mne
 
 from mne_bids import (BIDSPath, read_raw_bids)
 from utils.ccs_eeg_semesterproject import load_precomputed_badData, load_precomputed_ica
-from utils.ccs_eeg_utils import read_annotations_core
+from utils.ccs_eeg_utils_reduced import read_annotations_core
 
 
 def load_subject(subject, dataset):
@@ -137,11 +137,11 @@ def run_ica(raw, dataset, subject, search='manual'):
             exclude = [0, 2]  # Through eog: 0, 2
         elif subj == '014':
             exclude = [0, 1, 9]  # Through eog: 0,1
-        # ica.plot_overlay(ica_raw, exclude=exclude)  # Plot differences through exclude
-        # ica.exclude = exclude
         # Apply ica to the raw object
         raw.load_data()
-        # ica.plot_overlay(ica_raw, exclude=exclude)
+        # ica.plot_overlay(ica_raw,
+        #                 title="Signals before (red) applying ICA and after (black) applying ICA on subject 003",
+        #                 exclude=exclude)
         raw = ica.apply(raw, exclude=exclude)
         # Lastly save the ica to a file
         folder = "Dataset\\" + dataset + "\\sub-" + subject + "\\ses-" + dataset + "\\eeg\\"